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Image of blue rendered molecular structure

Case Study: Leveraging Automated High-Throughput Clonal Selection

Automation using IMCStips® with
Hamilton Microlab® STAR™

Presenters and Moderator

2022-10-08T23_16_20

Presenter: Carter Mitchell, PhD

Chief Science Officer at Kemp Proteins
Joe_Corvera_IMG_1891_50-rotated (1)

Presenter: Joe Corvera, MS

Project Manager at Kemp Proteins
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Moderator: Ana Gupte, PhD

Principal Advisor at AG Health Advisors

Executive Summary

Kemp Proteins have recognized that recently their clients are particularly interested in high throughput initial analyses to increase success in downstream large-scale productions. The use of IMCS and Hamilton STAR streamlined the generation of Gen1 Anti-DYK by leveraging automated high-throughput processes. This helped to accelerate biomarker and therapeutic discovery programs by broadening the ability to screen candidates in a high-throughput manner, mitigating risk of non-productive candidates through early elimination, and allowing rapid analysis throughout the program. As a result, timelines are reduced, and success is increased.

Challenges

One of Kemp's clients requested numerous small-scale test expressions with purifications using an expensive Anti-DYK affinity resin. And generally, commercial Anti-DYK resins have higher endotoxin levels than Kemp’s release criteria. This led to a unique opportunity for Kemp to develop a Gen1 Anti-DYK antibody conjugated to resin and packaged into the IMCStips platform.

How IMCS Helped

The implementation of automated processes streamlines the process of clonal selection from productivity of expression and through direct interrogation of the expressed molecules of interest. The IMCS and Hamilton platforms were instrumental in providing rapid solutions to generate material that enable higher quality downstream characterization assays and informed decisions on clone selection and scale up. These methodologies enable the acceleration of protein-based discovery programs through broadening the ability to screen candidates in high throughput manner while simultaneously of mitigating the risk of non-productive candidates through early elimination and allowing rapid analysis throughout the program which reduces timelines and increases success. This workflow has been successfully applied to other protein targets at Kemp and is quickly becoming a preferred platform for many of their clients.

Results, Return on Investment, and Future Directions

RESIN SCREENING FOR TIP-BASED AFFINITY PURIFICATION Expand
  • Further characterization is hampered by impurities present in the supernatant -> use automated microscale purifications to decrease such impurities and enhance the breadth of further downstream analysis
  • Compared 3 Protein A affinity resins (Praesto Jetted A50, Resin A, and Resin B) to identify the resin with the best capture and superior performance
  • Praesto Jetted A50 outperforms the other 2 commercially available Protein A resins in total yield across various hybridoma clone isotopes
  • Sometimes the competitor resins captured only 1/4 to 1/3 of the protein of interest as seen with clones 5B4 and 1B10
SIZE EXCLUSION AND BUFFER EXCHANGE Expand
  • Tip-based affinity purification (Protein A) included an automated buffer exchange step using the SizeX IMCStips so the eluents are in a buffer that is more conducive for downstream applications
  • Praesto Jetter A50 capture and subsequent SizeX desalting generated between 0-375 ug of mirroring IgG from various selected hybridoma clones

Quotes from Presentation

“Previously, we would use batch-binding methods to protein-A based resin or nickel affinity, which would require us to do it in batches as well, so maybe we could handle 10 or 20 per day. It’s kind of a balancing act of making sure you don’t make mistakes and keep the right fraction separate from the others. By doing a plate-based automated separation, we can get through 24+ samples in about 3 or 4 hours and we don’t have the risk of cross-mislabeling or moving fractions or anything like that.”

"Furthermore, it’s pretty much hands-free, where our purification scientists can set up the plate with the buffers and press the button. And in instances where we have some errors that happen from our scripts or methodologies, the purification scientists get on the phone with the specialist who can smooth out any issues that we may have. So, I think that the throughput and the minimization of mistakes from human error is really a big player here, and it allows our purification scientists to get back to doing more important large-scale purifications at that point while the smaller stuff is going on in the background.”

"Purification modalities that require elution with imidazole pH often necessitate buffer exchange to enable downstream analytics. IMCS provides a solution to his burden with their SizeX tips. The automated desalting steps follow a general size exclusion technique for the smaller buffer components for migrating through the resin pores and the large proteins of interest are excluded from the internal volume. These tips enable hands-free, rapid desalting that minimizes risk of human error in a high-throughput manner.”

"For therapeutic programs or products where purified monoclonal antibodies are needed for functional assays, the IMCStips on the Hamilton STAR provides a powerful, efficient, and scalable path to be able to provide purified antibody screening for antibody functionality and early stage of the program. This capability is critical for therapeutic-based antibody discovery programs, which are typically larger in scale, to be able to generate large amounts of IgG that can surpass multiple screening steps for binding, specificity, productivity, functionality, and other downstream requirements."

"The IMCS and Hamilton partnership has provided a comprehensive, high throughput, automated microscale purification package that includes chromatography tips, methods, and instrumentation platform with scripts that are essentially plug and play. We routinely use the IMCS and Protein A-based purification schemes for our automated processes."

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Caleb R. Schlachter, Ph.D.

Principal Scientist
Caleb R. Schlachter, Ph.D., as the Principal Scientist at IMCS, leads and provides guidance for several research and development projects that involve proteins, including enzymes for glycan hydrolysis and glycan synthesis. He has co-authored multiple patents, posters, and peer-reviewed articles on β-glucuronidases and sulfatases.
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Gray D. Amick, Ph.D.

Director of Operations
Gray D. Amick, Ph.D., is the Director of Operations at IMCS with over 26 years of experience in forensic DNA analysis and toxicology. Prior to joining IMCS, he led forensic DNA testing for the Richland County Sheriff’s Department as technical leader and lab director. He has been court-qualified as an expert over 100 times and has authored and co-authored multiple posters and peer-reviewed articles.
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Amanda C. McGee

Research Scientist
Amanda C. McGee is a Research Scientist at IMCS involved with enzyme characterizations, new analytical method developments, and advanced technical support. She joined IMCS with several years of experience in analytical testing for active pharmaceutical ingredients as per cGMP, USP and ICH guidelines. She has co-authored peer reviewed articles in the Journal of Analytical Toxicology and presented research at national and international conferences.
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L. Andrew Lee, Ph.D.

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L. Andrew Lee, Ph.D. co-founded IMCS and leads research and development efforts in enzyme engineering and automated micro-chromatography workflows. He directs new market efforts in glycan synthesis, supported by three NIH Fast-Track awards.

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